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The idea that MRI scans can reliably determine a person's transgender status is a myth. While MRI scans can show differences in brain structure and activity in transgender people, they are not a reliable tool for making a diagnosis.
Brain Sex in Transgender Women Is Shifted towards Gender Identity - PMC
Transgender people report discomfort with their birth sex and a strong identification with the opposite sex. The current study was designed to shed further light on the question of whether the brains of transgender people resemble their birth sex or ...
pmc.ncbi.nlm.nih.gov